Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015877540.1_cds_XP_016436493.1_32349
CDS Infomation

[gene=LOC107762636] [db_xref=GeneID:107762636] [protein=lysine-specific demethylase JMJ25-like] [protein_id=XP_016436493.1] [location=join(47448..47981,48318..48457,48532..48631,48742..48874,48966..49020,49136..49814,50006..50335,50739..51164,51265..51337,51753..51838,58662..58781,58861..58931,59340..59439)] [gbkey=CDS]
Sequence

ATGGATTATACACGATCATCCTCTGGGCCTGGTGAAGATAACATCGGGATTCCTGATGAT
TTGCGGTGTAAGAGGTCCGATGGGAAACAATGGAGATGCACTGCAATGTCTATGCCTGAT
AAGACTGTGTGTGAAAAGCACTACATACAGGCTAAGAAGAGGGCTGCAAATTCTGCAATG
AGAGCCAACATGAAAAAAGGAAAGAGAAAATCATTGGATGAAAATGATGTATATTCGGAG
AGTAAAAGTGATGATATGGATTTACCAGATGCGAACCAGAAAATTGAGGATTATTCTGGT
GCAGTCTCTGGGAAGAGGCATAAGGAAAAGGTGTCAAAGAATCGGATGAGTTATTTATCT
GAAACACCTCAAAGCAAGATGTTTTTAGTTCGCAGCATGAAGTCTGCTGATGATCTAGAC
ATGGAAGGTATGCAGTATGATGAAAGCCATAGAGGTTACAGGACGCCACCCCCTTCTGGT
ATGGAGTCATCCAGAAGCAGATCGCAGAAGATGTTTGATTCAAGTCCTACGACGGGAACT
TCTGAAGCGAGCTCAGATTCTTCTGATAATACAGGGGGACAACGTTGTCACCAGTGTAGG
CGGAACAATCAACAAGTAACTTGGTGCCTTAGATGTGATAGAAGAGGATACTGTGAAAGC
TGCATCTCAACTTGGTACTCCGACATGCCTGTTGAAGAGATACAGAGGATTTGTCCTGCG
TGTCGTGGTAGTTGCAATTGTAAAGTGTGTTTGCGTGGAGGCAACTTGATAAAGGTTAGA
ATAAGGGAGATATCTGCACAAAACAAACTGCAGTTTCTCTATTCCCTTTTATCAGCAGTT
CTTCCAGTAGTTAAGCACATTCATAATCAGCAGTGCTTTGAGGTAGAGTTGGAAAAAAAA
CTTCGAGGAAATGGAATGGATCTCGGCCGGACCAAATTGAATGCAGATGAGCAAATGTGC
TGTAATTTCTGCAGGATACCAATTATTGATTACCATAGACACTGCCCAAATTGCTCATAT
GACCTCTGCCTCAGCTGCTGCAAAGATATCAGAGATGCAACCAAGGTTATTCAGGAAGAC
AGGGGTAAGCAGTTCCCAGGAAGAGTTGATGGCAGAAAAGCCACGTCAAAGGAAGTGAAA
TTGTCAAACGTTCATCTAAATTTATTCACCAAGCTTTCTGATTGGAAAACAGATAGTAAT
GGCTACATACCATGTCCACCGAAGCAATATGGAGGCTGCAATTCCTCTGTCTTATCATTA
AAGCGAATCTTTAAGATGAATTGGGTGGCTAAACTGGTGAAAAATGTAGAAGAAATGGTT
AGTGGCTGTGAAGTATGTGATTCTGGTGATCTAGATAATATCTCTGAAGGGAAGTTGTTC
CAGGCTGCTCATAGAGAGAATGGTGATGATAACTTTTTGTACCATCCATCTTCTGAAGAT
ATTAGAAGTGAAGGGATTGAGAAATTCAGAAAGCAATGGAGCAGAGGTAAACCTGTTATC
ATCAAGGATGTTTATGATGTATCATCAATGTCAAACTGGGATCCAGTCGTAATATGGAGA
GGAGTAAGGGAGACAACCGAGGAGAAAACAAAAGATGATAACAGAAATGTGAAGGCCATT
GATTGCTTTGGTTGGAGTGAGATTGATATTCAGCTTGGTCAGTTCATCAGAGGATACTCA
GAGGGAAGAATTCATGAGAATGGTTGGCCAGAAATGCTCAAATTGAAAGATTGGCCTTCT
CCTAGTGCTTCAGAAGAGTTTTTGTTATACCAGAGACCTGAGTTTATTAGTAAACTTCCT
TTACTTGAATTCATCCACTCCAAGTGGGGTCTTCTAAATGTAGCTGCAAAATTGCCTCAT
TATTCCCTGCAGAATGATGTTGGTCCTAAGATTTTTATTTCTTATGGGATGTATGAAGAA
CTTGGTAGAGGTGACTCAGTGAACAATCTGCACATCAACATGCGTGACCTAGTATTCCTT
TTGGTCCATGTCAGTGAGGTCAAACTAAAAGGTTGGCAGAAGACAAAGATAGGAAAGATA
CAGAAAGCCTTTGCTGAATCTGATCACAGAGAATTTCCTGGTGCTGCGCTAAATGTCTCA
AGCGAAGGAGATTTCTCCAAATTCTCACCTGGTGGAGATAAAGGGGATGATCATTATGCT
GATACAGATTCAAATGCCAATAAAATGTTGGTCGACCAAGAGAGCAGAGCTTCTCAGATT
GATGTAGATAACTTTAGTCATGAAGATCTGAATGGTTCCAATTTAAACAGCTCTGAGACG
AGTCAGTCTGGGGCTCTTTGGGATGTCTTCCGCAGGCAGGATGTGCCGATGCTGATCGAG
TATCTAAGATTTCATTGGAAGAAACATGGAGATTCAGACCGTGTAACAGATGATTCTGTG
CCCAGTCCTCTCCACGATGGAATAGTATATTTGAATGAGCATCATAAGAGAAAGTTGAAA
GAGATATTTGGAATAGAGCCTTGGTCATTTGAACAGCAGTTAGGTGAAGCAATTTTCATT
CCTGCTGGATGTCCTTTCCAAGTGAGGAATCTTCAGTCCACTGTTCAATTGGGCCTTGAT
TTTCTTTCTCCAGAAAGTTTAGGTGAGGCTGTTAGAATGGCTGAAGAAATCCGTGGCCTT
CCTAATACTCATGATGCGAAGCTGCAAATGTTGGAGGTGGGGAAGATATCGCTCTATGCA
GCAAGCTCAGCCATCAAAGAAGTTCAGAAGTTGGTTCTGGATCCTAAAGTTGGTCCTGAG
CTTGGATTTGAGGATCCCAATTTGACTGCATTGGTGTCAGAGAACCTGGAAAAGATGATT
AAGAGACGTCAGGTAGCTTGCGTTTAA

Peptide Sequence

PEP ID

XP_016436493.1
PEP Infomation

PREDICTED: lysine-specific demethylase JMJ25-like [Nicotiana tabacum]
Sequence

MDYTRSSSGPGEDNIGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAM
RANMKKGKRKSLDENDVYSESKSDDMDLPDANQKIEDYSGAVSGKRHKEKVSKNRMSYLS
ETPQSKMFLVRSMKSADDLDMEGMQYDESHRGYRTPPPSGMESSRSRSQKMFDSSPTTGT
SEASSDSSDNTGGQRCHQCRRNNQQVTWCLRCDRRGYCESCISTWYSDMPVEEIQRICPA
CRGSCNCKVCLRGGNLIKVRIREISAQNKLQFLYSLLSAVLPVVKHIHNQQCFEVELEKK
LRGNGMDLGRTKLNADEQMCCNFCRIPIIDYHRHCPNCSYDLCLSCCKDIRDATKVIQED
RGKQFPGRVDGRKATSKEVKLSNVHLNLFTKLSDWKTDSNGYIPCPPKQYGGCNSSVLSL
KRIFKMNWVAKLVKNVEEMVSGCEVCDSGDLDNISEGKLFQAAHRENGDDNFLYHPSSED
IRSEGIEKFRKQWSRGKPVIIKDVYDVSSMSNWDPVVIWRGVRETTEEKTKDDNRNVKAI
DCFGWSEIDIQLGQFIRGYSEGRIHENGWPEMLKLKDWPSPSASEEFLLYQRPEFISKLP
LLEFIHSKWGLLNVAAKLPHYSLQNDVGPKIFISYGMYEELGRGDSVNNLHINMRDLVFL
LVHVSEVKLKGWQKTKIGKIQKAFAESDHREFPGAALNVSSEGDFSKFSPGGDKGDDHYA
DTDSNANKMLVDQESRASQIDVDNFSHEDLNGSNLNSSETSQSGALWDVFRRQDVPMLIE
YLRFHWKKHGDSDRVTDDSVPSPLHDGIVYLNEHHKRKLKEIFGIEPWSFEQQLGEAIFI
PAGCPFQVRNLQSTVQLGLDFLSPESLGEAVRMAEEIRGLPNTHDAKLQMLEVGKISLYA
ASSAIKEVQKLVLDPKVGPELGFEDPNLTALVSENLEKMIKRRQVACV

Transcript Sequence

Gene sequence data has not been registered.